Basic Information
Locus ID:
gene-LOC132640650
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 19282700 | 19294564 | - | gene-LOC132640650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 66,889.38 Da | 47.43 | 76.54 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 326 | 604 | 2.24851E-54 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 484 | 519 | 4.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 402 | 439 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 359 | 395 | 6.8E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 569 | 603 | 0.25 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 327 | 353 | 0.013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 315 | 604 | 3.16E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 453 | 604 | 6.6E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 295 | 452 | 2.4E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 356 | 395 | 3.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 399 | 439 | 4.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 481 | 519 | 6.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 565 | 604 | 0.044 | IPR001680 |
| SMART | SM00320 | WD40_4 | 315 | 354 | 4.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 522 | 561 | 4.3 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 406 | 443 | 9.414692 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 363 | 395 | 10.706503 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 363 | 395 | 12.881143 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 572 | 604 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 6 | 38 | 8.044407 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 406 | 448 | 11.744925 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 322 | 354 | 9.138305 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 572 | 604 | 11.260138 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 284 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32551.1 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. | 0 |
| RefSeq | XP_049358081.1 | uncharacterized protein LOC125822692 [Solanum verrucosum] | 0 |
| Q9FUY2 | Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 | 0 | |
| TrEMBL | A0A1U8FTV6 | lissencephaly-1 homolog OS=Capsicum annuum OX=4072 GN=LOC107859368 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology