Basic Information
Locus ID:
gene-LOC132640612
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 17969544 | 17978580 | + | gene-LOC132640612 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 42,305.76 Da | 36.39 | 94.49 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 153 | 230 | 2.1E-6 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 91 | 349 | 1.17E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 8 | 355 | 5.7E-63 | IPR015943 |
| SMART | SM00320 | WD40_4 | 178 | 215 | 0.31 | IPR001680 |
| SMART | SM00320 | WD40_4 | 309 | 349 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 267 | 306 | 5.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 136 | 174 | 0.57 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 317 | 347 | 8.870959 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_049374711.1 | SEC12-like protein 2 [Solanum verrucosum] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | M1A6I5 | Prolactin regulatory element-binding protein OS=Solanum tuberosum OX=4113 GN=102596955 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology