Basic Information
Locus ID:
gene-LOC132640585
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 17475997 | 17484210 | + | gene-LOC132640585 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 81,980.94 Da | 31.43 | 92.99 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 256 | 302 | 5.4E-11 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 553 | 602 | 1.3E-12 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 158 | 187 | 4.3E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 126 | 155 | 2.5E-5 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 453 | 500 | 1.8E-8 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 329 | 354 | 0.48 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 357 | 387 | 2.1E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 427 | 449 | 3.3E-4 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 205 | 311 | 1.8E-16 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 20 | 204 | 5.2E-28 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 312 | 403 | 5.8E-16 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 509 | 604 | 2.7E-23 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 404 | 508 | 7.9E-18 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 605 | 730 | 5.7E-9 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 259 | 292 | 6.7E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 556 | 590 | 6.8E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 357 | 391 | 7.4E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 427 | 449 | 1.9E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 455 | 488 | 0.0022 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 126 | 155 | 1.9E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 593 | 626 | 6.1E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 158 | 190 | 4.1E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 124 | 158 | 10.676364 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 590 | 625 | 10.325603 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 453 | 487 | 10.270796 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 257 | 291 | 11.520384 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 355 | 389 | 9.97484 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 554 | 588 | 10.698286 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49740.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_019245771.1 | PREDICTED: pentatricopeptide repeat-containing protein At3g49740 [Nicotiana attenuata] | 0 |
| Q9M2Y4 | Pentatricopeptide repeat-containing protein At3g49740 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E84 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1J6J0L0 | Pentatricopeptide repeat-containing protein OS=Nicotiana attenuata OX=49451 GN=PCMP-E84 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg30734 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16765 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027500 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g128540, BVRB_6g128580 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13215, Sbi_jg52603 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9214 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010092 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34551, Sgl39966 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000000450, gene:ENSEOMG00000027756 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30204700, pistato.v30204710 |
| Apiaceae | Apium graveolens | 2 | Ag9G00075, AgUnG01470 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G007320 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721431 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3888.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G01128 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G49740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010148m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g12340.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g075510.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0443 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0460 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g00820 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6681 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2605 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1610, evm.TU.LG12.281 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g27490 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1177 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-792 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2432 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.237 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19235 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1871 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132640585 |
| Solanaceae | Solanum chilense | 1 | SOLCI004421600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018860 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25187_chr10_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3545 |
| Zosteraceae | Zostera marina | 1 | Zosma06g01920.v3.1 |