Basic Information
Locus ID:
gene-LOC132640583
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 17264561 | 17279332 | + | gene-LOC132640583 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 67,918.20 Da | 45.84 | 74.16 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 337 | 621 | 1.36598E-54 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 373 | 406 | 4.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 416 | 450 | 0.024 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 340 | 365 | 0.0033 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 493 | 551 | 1.7E-4 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 337 | 621 | 6.33E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 279 | 458 | 1.3E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 459 | 621 | 2.0E-25 | IPR015943 |
| SMART | SM00320 | WD40_4 | 367 | 406 | 2.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 498 | 536 | 3.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 410 | 450 | 2.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 539 | 578 | 0.37 | IPR001680 |
| SMART | SM00320 | WD40_4 | 327 | 365 | 1.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 582 | 621 | 1.2 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 596 | 621 | 8.503359 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 417 | 454 | 8.65015 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 374 | 406 | 11.049229 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 345 | 374 | 9.940341 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 589 | 621 | 8.57106 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 417 | 459 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 374 | 406 | 13.315579 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 437 | 451 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 352 | 366 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 608 | 621 | 3.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 352 | 366 | 3.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 393 | 407 | 3.2E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 288 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_016559838.2 | uncharacterized protein LOC107859368 isoform X1 [Capsicum annuum] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8FTV6 | lissencephaly-1 homolog OS=Capsicum annuum OX=4072 GN=LOC107859368 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology