Basic Information
Locus ID:
gene-LOC132640517
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 13982765 | 13988784 | - | gene-LOC132640517 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 71,950.22 Da | 49.95 | 88.18 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 53 | 145 | 5.4E-8 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 215 | 489 | 4.8E-93 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 46 | 144 | 9.42E-15 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 44 | 156 | 9.2E-11 | IPR011333 |
| SMART | SM00225 | BTB_4 | 55 | 153 | 1.8E-6 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 215 | 513 | 84.514076 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 55 | 125 | 10.861095 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 605 | 620 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 529 | 543 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 523 | 543 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 605 | 627 | - | - |
| Coils | Coil | Coil | 547 | 581 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10250.2 | - | 0 |
| RefSeq | XP_015167911.1 | PREDICTED: BTB/POZ domain-containing protein DOT3 isoform X1 [Solanum tuberosum] | 0 |
| Q9LFU0 | BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana OX=3702 GN=DOT3 PE=2 SV=1 | 0 | |
| TrEMBL | M1AAZ8 | Root phototropism protein OS=Solanum tuberosum OX=4113 GN=102598201 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39509 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16468 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027331 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g135110, BVRB_7g173420 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000003068 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0024260, CQ.Regalona.r1.6BG0025600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30196480 |
| Apiaceae | Apium graveolens | 1 | Ag4G02488 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G32585 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G10250.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015906m.g.v1.0 |
| Brassicaceae | Brassica nigra | 1 | BniB02g051670.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1741 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1802 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.659 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020972 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2447, evm.TU.LG06.688, evm.TU.LG11.129 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1066 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-935 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11482 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2328 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.604 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002295 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6114 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1758 |
| Salicaceae | Populus euphratica | 3 | populus_peu13771, populus_peu13772, populus_peu22928 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132640517 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020457 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16296 |