Basic Information
Locus ID:
gene-LOC132640501
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 13276117 | 13281915 | + | gene-LOC132640501 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 38,515.31 Da | 46.75 | 89.77 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 38 | 86 | 2.90747E-15 | - |
| Pfam | PF12906 | RING-variant domain | 38 | 85 | 5.2E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 34 | 90 | 2.12E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 34 | 91 | 1.2E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 37 | 86 | 4.3E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 30 | 92 | 20.150686 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22120.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_015075094.1 | uncharacterized protein LOC107019021 isoform X1 [Solanum pennellii] | 0 |
| TrEMBL | A0A6N2ATV4 | RING-CH-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_022412 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology