Basic Information
Locus ID:
gene-LOC132640303
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 7309767 | 7314193 | + | gene-LOC132640303 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.41 | 50,128.07 Da | 39.87 | 84.64 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 64 | 100 | 2.1E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 56 | 127 | 7.59E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 60 | 97 | 2.0E-7 | - |
| SMART | SM00256 | fbox_2 | 61 | 101 | 0.0073 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 158 | 388 | 3.6E-19 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06240.1 | F-box family protein. | 0 |
| RefSeq | XP_049404244.1 | putative F-box protein At1g47790 isoform X2 [Solanum stenotomum] | 0 |
| Q8GXC7 | F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1 | 0 | |
| TrEMBL | M1DR04 | F-box domain-containing protein OS=Solanum tuberosum OX=4113 GN=102587143 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 7 | gene-LOC132601986, gene-LOC132601987, gene-LOC132603133 ... |
| Solanaceae | Solanum chilense | 6 | SOLCI000005900, SOLCI001662300, SOLCI001819600 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107001609, gene-LOC107010212, gene-LOC107025894 ... |