Basic Information
Locus ID:
gene-LOC132640208
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
XH domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 4249910 | 4260380 | + | gene-LOC132640208 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 141,031.33 Da | 41.65 | 69.98 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12266 | RRM_like_XS | 733 | 839 | 1.14124E-41 | IPR005380 |
| Pfam | PF03470 | XS zinc finger domain | 209 | 252 | 6.3E-16 | IPR005381 |
| Pfam | PF03469 | XH domain | 1115 | 1242 | 5.3E-52 | IPR005379 |
| Pfam | PF03468 | XS domain | 731 | 840 | 7.8E-38 | IPR005380 |
| Pfam | PF03470 | XS zinc finger domain | 43 | 84 | 5.9E-10 | IPR005381 |
| Pfam | PF03470 | XS zinc finger domain | 286 | 329 | 7.4E-11 | IPR005381 |
| Pfam | PF03470 | XS zinc finger domain | 120 | 163 | 5.9E-16 | IPR005381 |
| Pfam | PF03470 | XS zinc finger domain | 496 | 539 | 2.3E-13 | IPR005381 |
| Pfam | PF03470 | XS zinc finger domain | 371 | 407 | 5.1E-8 | IPR005381 |
| Pfam | PF03470 | XS zinc finger domain | 584 | 627 | 2.7E-16 | IPR005381 |
| Gene3D | G3DSA:3.30.70.2890 | XS domain | 726 | 895 | 3.3E-57 | IPR038588 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 951 | 977 | - | - |
| Coils | Coil | Coil | 894 | 928 | - | - |
| Coils | Coil | Coil | 934 | 975 | - | - |
| Coils | Coil | Coil | 1050 | 1084 | - | - |
| Coils | Coil | Coil | 993 | 1048 | - | - |
| Coils | Coil | Coil | 1089 | 1109 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G48670.1 | XH/XS domain-containing protein. Encodes IDN2 (INVOLVED IN DE NOVO 2), a double-stranded RNA-binding protein involved in de novo methylation and small interfering RNA (siRNA)-mediated maintenance methylation. IND2 is a component of the RNA-directed DNA methylation pathway. | 0 |
| RefSeq | XP_049403501.1 | protein INVOLVED IN DE NOVO 2-like [Solanum stenotomum] | 0 |
| Q8VZ79 | Protein INVOLVED IN DE NOVO 2 OS=Arabidopsis thaliana OX=3702 GN=IDN2 PE=1 SV=1 | 0 | |
| TrEMBL | M1C5F7 | XH/XS domain-containing protein OS=Solanum tuberosum OX=4113 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132640208 |
| Solanaceae | Solanum chilense | 1 | SOLCI005203700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020824 |