HalophFGD

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Basic Information
Locus ID: gene-LOC132640169
Species & Taxonomic ID: Lycium barbarum & 112863
Genome Assembly: GCF_019175385.1
Description: F-box FBD LRR-repeat protein
Maps and Mapping Data
Chromosome Start End Strand ID
chr5 3364258 3367336 + gene-LOC132640169
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.98 47,813.04 Da 48.07 103.13 0.01
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
SUPERFAMILY SSF52047 RNI-like 134 346 1.07E-9 -
SUPERFAMILY SSF81383 F-box domain 18 62 5.56E-6 IPR036047
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 79 314 4.1E-6 IPR032675
SMART SM00579 9598neu4hmm 334 406 4.5E-11 IPR006566
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT1G13570.1 F-box/RNI-like superfamily protein. 0
RefSeq XP_009628124.1 F-box/FBD/LRR-repeat protein At1g13570-like [Nicotiana tomentosiformis] 0
Swiss-Prot Q9FZ70 F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana OX=3702 GN=At1g13570 PE=2 SV=1 0
TrEMBL A0A1S4BWH3 F-box/FBD/LRR-repeat protein At1g13570-like OS=Nicotiana tabacum OX=4097 GN=LOC107812604 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Salicaceae Populus euphratica 1 populus_peu17759
Solanaceae Lycium barbarum 8 gene-LOC132601437, gene-LOC132628337, gene-LOC132628338 ...
gene-LOC132630257, gene-LOC132640169, gene-LOC132641237, gene-LOC132642201, gene-LOC132642651
Solanaceae Solanum pennellii 2 gene-LOC107020257, gene-LOC107020267
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.