Basic Information
Locus ID:
gene-LOC132640128
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
ICP0-binding domain of Ubiquitin-specific protease 7
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 2798173 | 2807812 | + | gene-LOC132640128 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 52,051.38 Da | 38.11 | 85.90 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 317 | 441 | 1.4335E-40 | IPR002083 |
| Pfam | PF00917 | MATH domain | 323 | 441 | 5.4E-21 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 99 | 279 | 3.7E-46 | IPR024729 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 314 | 446 | 3.6E-43 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 163 | 277 | 1.2E-42 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 317 | 447 | 2.2E-46 | IPR008974 |
| SMART | SM00061 | math_3 | 318 | 422 | 5.1E-23 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 316 | 441 | 37.164536 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.3 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_049354814.1 | ubiquitin C-terminal hydrolase 12-like [Solanum verrucosum] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0V0I8Q2 | Putative ubiquitin carboxyl-terminal hydrolase 12-like OS=Solanum chacoense OX=4108 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 4 | pistato.v30052220, pistato.v30053190, pistato.v30054840 ... |
| Apiaceae | Apium graveolens | 1 | Ag1G00610 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G17586 |
| Poaceae | Oryza coarctata | 1 | Oco21G007500 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132640125, gene-LOC132640126, gene-LOC132640127 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI002249300 |
| Zosteraceae | Zostera marina | 1 | Zosma02g00200.v3.1 |