Basic Information
Locus ID:
gene-LOC132640124
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 2852827 | 2876034 | + | gene-LOC132640124 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 130,731.96 Da | 42.59 | 78.50 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 54 | 177 | 2.85363E-39 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 195 | 523 | 2.43262E-167 | - |
| Pfam | PF00917 | MATH domain | 59 | 178 | 5.1E-19 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 884 | 1094 | 2.8E-57 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 622 | 874 | 1.5E-73 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 197 | 518 | 3.1E-47 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 192 | 550 | 1.04E-96 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 50 | 186 | 3.11E-42 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 193 | 522 | 6.7E-89 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 800 | 897 | 4.0E-26 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 50 | 192 | 4.1E-52 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 682 | 799 | 5.5E-44 | - |
| SMART | SM00061 | math_3 | 54 | 158 | 1.8E-20 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 52 | 177 | 39.46579 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 197 | 521 | 40.017437 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 437 | 454 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 198 | 213 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| Coils | Coil | Coil | 534 | 562 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_016573760.1 | ubiquitin C-terminal hydrolase 12 [Capsicum annuum] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2G3CIQ4 | ubiquitinyl hydrolase 1 OS=Capsicum chinense OX=80379 GN=BC332_14287 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology