Basic Information
Locus ID:
gene-LOC132640056
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
DNA repair protein recA homolog 3, mitochondrial
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1520750 | 1527386 | + | gene-LOC132640056 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.77 | 45,064.98 Da | 33.08 | 94.01 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 59 | 323 | 1.7E-118 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 59 | 322 | 1.3E-55 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 324 | 380 | 8.5E-8 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 86 | 385 | 2.5E-111 | IPR027417 |
| SMART | SM00382 | AAA_5 | 109 | 283 | 2.9E-7 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 56 | 379 | 1.8E-136 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 87 | 246 | 34.992874 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 256 | 327 | 26.567053 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 268 | 276 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 145 | 174 | 8.1E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 298 | 327 | 8.1E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 265 | 293 | 8.1E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 179 | 208 | 8.1E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 352 | 369 | 8.1E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 217 | 246 | 8.1E-76 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 56 | 384 | 43.067917 | IPR013765 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_006345822.1 | PREDICTED: DNA repair protein recA homolog 3, mitochondrial isoform X2 [Solanum tuberosum] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | M1C546 | DNA repair protein recA homolog 3, mitochondrial OS=Solanum tuberosum OX=4113 GN=102594430 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology