Basic Information
Locus ID:
gene-LOC132640003
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
FBD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 556754 | 560364 | + | gene-LOC132640003 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.44 | 49,381.98 Da | 42.61 | 101.30 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08387 | FBD | 353 | 385 | 1.1E-6 | IPR006566 |
| SUPERFAMILY | SSF81383 | F-box domain | 41 | 86 | 1.13E-6 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 80 | 305 | 4.76E-11 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 48 | 367 | 3.3E-8 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 48 | 99 | 9.073559 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58860.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_016467467.1 | PREDICTED: F-box/FBD/LRR-repeat protein At5g56420-like isoform X1 [Nicotiana tabacum] | 0 |
| TrEMBL | A0A1S3ZSX7 | F-box/FBD/LRR-repeat protein At5g56420-like isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107790082 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg22882, jg26218, jg28878, jg28880, jg28881, jg29020 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.110 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132623410, gene-LOC132640003 |