Basic Information
Locus ID:
gene-LOC132639923
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 140371612 | 140373773 | + | gene-LOC132639923 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 52,314.80 Da | 42.73 | 85.82 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00067 | Cytochrome P450 | 369 | 432 | 1.2E-7 | IPR001128 |
| Pfam | PF00646 | F-box domain | 45 | 83 | 4.2E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 45 | 97 | 2.62E-11 | IPR036047 |
| SUPERFAMILY | SSF48264 | Cytochrome P450 | 374 | 435 | 1.15E-13 | IPR036396 |
| Gene3D | G3DSA:1.10.630.10 | Cytochrome P450 | 360 | 445 | 4.5E-15 | IPR036396 |
| Gene3D | G3DSA:1.20.1280.50 | - | 30 | 79 | 1.5E-7 | - |
| SMART | SM00256 | fbox_2 | 43 | 83 | 4.8E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 143 | 318 | 2.7E-21 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32420.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_009609989.1 | putative F-box protein At1g50870 [Nicotiana tomentosiformis] | 0 |
| Q9LQL5 | Putative F-box protein At1g32420 OS=Arabidopsis thaliana OX=3702 GN=At1g32420 PE=4 SV=1 | 0 | |
| TrEMBL | A0A1S4AXH6 | putative F-box protein At1g50870 OS=Nicotiana tabacum OX=4097 GN=LOC107802372 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 5 | gene-LOC132607706, gene-LOC132639922, gene-LOC132639923 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI000279300, SOLCI004455400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019227 |