Basic Information
Locus ID:
gene-LOC132639922
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 140366684 | 140367784 | + | gene-LOC132639922 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.23 | 42,811.76 Da | 44.92 | 79.34 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 40 | 78 | 1.5E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 40 | 85 | 5.63E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 25 | 74 | 1.8E-6 | - |
| SMART | SM00256 | fbox_2 | 38 | 78 | 4.1E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 138 | 293 | 7.3E-21 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16810.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_009609989.1 | putative F-box protein At1g50870 [Nicotiana tomentosiformis] | 0 |
| Q84X43 | F-box only protein 8 OS=Arabidopsis thaliana OX=3702 GN=FBX8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1S4AXH6 | putative F-box protein At1g50870 OS=Nicotiana tabacum OX=4097 GN=LOC107802372 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 5 | gene-LOC132607706, gene-LOC132639922, gene-LOC132639923 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI000279300, SOLCI004455400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019227 |