Basic Information
Locus ID:
gene-LOC132639733
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 139343538 | 139355044 | + | gene-LOC132639733 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 25,216.99 Da | 54.24 | 64.00 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 136 | 218 | 2.62271E-36 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 138 | 208 | 9.0E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 126 | 231 | 2.55E-14 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 132 | 223 | 8.0E-20 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 137 | 214 | 6.9E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 136 | 222 | 12.065728 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76940.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_016454052.1 | PREDICTED: RNA-binding protein 2-like isoform X1 [Nicotiana tabacum] | 0 |
| G7ID19 | RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1S3YPT1 | RNA-binding protein 2-like isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107778330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology