Basic Information
Locus ID:
gene-LOC132639592
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 104087735 | 104090278 | + | gene-LOC132639592 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 41,299.66 Da | 44.15 | 85.40 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17814 | LisH-like dimerisation domain | 4 | 32 | 2.5E-6 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 224 | 322 | 6.51E-5 | IPR036322 |
| SMART | SM00668 | ctlh | 33 | 91 | 3.1E-7 | IPR006595 |
| SMART | SM00667 | Lish | 3 | 35 | 2.3E-5 | IPR006594 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 3 | 35 | 10.296106 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 33 | 91 | 10.819099 | IPR006595 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_009602995.1 | protein TPR3-like [Nicotiana tomentosiformis] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S3X1L1 | protein TPR3-like OS=Nicotiana tabacum OX=4097 GN=LOC107760294 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 5 | Sgl13166, Sgl15271, Sgl18389, Sgl35793, Sgl63808 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4BG0018880 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30080030, pistato.v30081240, pistato.v30099810 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G010590 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.130.V1.1, AsparagusV1_03.1555.V1.1 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr29G011090 |
| Poaceae | Zea mays | 1 | Zm00001eb019610_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39020 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22323 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132639592 |