Basic Information
Locus ID:
gene-LOC132639068
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Short Name:
SOC1
Description:
MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 136657690 | 136691126 | - | gene-LOC132639068 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.53 | 25,994.72 Da | 46.77 | 78.49 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 72 | 1.51873E-42 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 1.5E-25 | IPR002100 |
| Pfam | PF01486 | K-box region | 87 | 173 | 1.6E-23 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 83 | 6.67E-33 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 104 | 1.0E-29 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 4.0E-40 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.748983 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 89 | 179 | 14.16347 | IPR002487 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 2.1E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 2.1E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 2.1E-30 | IPR002100 |
| Coils | Coil | Coil | 123 | 143 | - | - |
| Coils | Coil | Coil | 152 | 172 | - | - |
| Coils | Coil | Coil | 75 | 109 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62165.1 | AGAMOUS-like 42. Encodes a MADS box transcription factor. Expressed in quiescent center. | 0 |
| RefSeq | XP_016447855.1 | PREDICTED: MADS-box protein AGL42-like [Nicotiana tabacum] | 0 |
| Q9FIS1 | MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S3Y6T8 | MADS-box protein AGL42-like OS=Nicotiana tabacum OX=4097 GN=LOC107772910 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology