Basic Information
Locus ID:
gene-LOC132638541
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 120257797 | 120265960 | - | gene-LOC132638541 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 80,314.60 Da | 44.43 | 97.08 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 37 | 328 | 6.59928E-145 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 346 | 644 | 1.25527E-152 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 353 | 640 | 4.2E-26 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 36 | 326 | 6.02E-34 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 353 | 645 | 2.07E-38 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 347 | 645 | 1.2E-39 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 35 | 328 | 4.0E-28 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 37 | 330 | 27.549128 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 346 | 645 | 34.767899 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_019260666.1 | PREDICTED: glycerophosphodiester phosphodiesterase GDPDL3-like isoform X1 [Nicotiana attenuata] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A314LD68 | glycerophosphodiester phosphodiesterase OS=Nicotiana attenuata OX=49451 GN=GDPDL3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology