Basic Information
Locus ID:
gene-LOC132638339
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 31253995 | 31255749 | - | gene-LOC132638339 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 53,036.54 Da | 50.33 | 74.37 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 87 | 415 | 7.15928E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 195 | 224 | 0.037 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 230 | 266 | 6.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 372 | 414 | 0.11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 332 | 362 | 0.0076 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 138 | 161 | 0.16 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 86 | 417 | 4.76E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 175 | 452 | 1.2E-42 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 71 | 174 | 2.1E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 228 | 267 | 4.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 326 | 363 | 0.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 370 | 415 | 0.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 274 | 319 | 0.25 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 161 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 187 | 225 | 0.016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 84 | 121 | 0.28 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 333 | 372 | 10.107432 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 235 | 266 | 9.441055 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 193 | 234 | 10.408196 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 235 | 266 | 11.277069 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 148 | 162 | 5.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 212 | 226 | 5.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 350 | 364 | 5.9E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04218 (Cellular senescence)
map04218 (Cellular senescence)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04340 (Hedgehog signaling pathway)
map04340 (Hedgehog signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18950.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_016552879.1 | protein JINGUBANG-like [Capsicum annuum] | 0 |
| O48716 | Protein JINGUBANG OS=Arabidopsis thaliana OX=3702 GN=JGB PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8F9G6 | uncharacterized WD repeat-containing protein alr3466-like OS=Capsicum annuum OX=4072 GN=LOC107852332 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology