Basic Information
Locus ID:
gene-LOC132637851
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 135782952 | 135783968 | + | gene-LOC132637851 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 39,128.66 Da | 97.71 | 92.57 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 281 | 319 | 1.4E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 281 | 319 | 1.67E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 231 | 324 | 3.8E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 282 | 319 | 9.656702 | IPR001841 |
| Coils | Coil | Coil | 85 | 107 | - | - |
| Coils | Coil | Coil | 45 | 82 | - | - |
| Coils | Coil | Coil | 229 | 249 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G45180.2 | - | 0 |
| RefSeq | XP_049347424.1 | probable E3 ubiquitin-protein ligase ZFP1 [Solanum verrucosum] | 0 |
| Q9ZQF9 | E3 ubiquitin-protein ligase MBR1 OS=Arabidopsis thaliana OX=3702 GN=MBR1 PE=1 SV=1 | 0 | |
| TrEMBL | M1AD28 | 6b-interacting protein 1 OS=Solanum tuberosum OX=4113 GN=102599601 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg13039 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g21230 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00028652, Pov_00033909, Pov_00033910 |
| Solanaceae | Lycium barbarum | 7 | gene-LOC132619581, gene-LOC132637834, gene-LOC132637850 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI000413600, SOLCI002808400, SOLCI003913300 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107005954, gene-LOC107022247, gene-LOC114075203 |