Basic Information
Locus ID:
gene-LOC132637398
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Leucine Rich Repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 34527678 | 34533504 | + | gene-LOC132637398 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 71,032.18 Da | 40.96 | 99.95 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 108 | 165 | 3.0E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 229 | 288 | 2.4E-9 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 424 | 608 | 3.9E-35 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 411 | 609 | 4.72E-55 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 57 | 334 | 6.12E-53 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 408 | 620 | 1.3E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 216 | 342 | 8.4E-27 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 215 | 1.9E-41 | IPR032675 |
| SMART | SM00220 | serkin_6 | 422 | 624 | 1.9E-10 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 422 | 629 | 30.025576 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 556 | 568 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 428 | 451 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_009628517.1 | LRR receptor-like serine/threonine-protein kinase SIK1 isoform X3 [Nicotiana tomentosiformis] | 0 |
| O49545 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana OX=3702 GN=BAM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S4CPW7 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 isoform X2 OS=Nicotiana tabacum OX=4097 GN=LOC107821115 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology