Basic Information
Locus ID:
gene-LOC132637219
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
CONTAINS InterPro DOMAIN s F-box associated type 3 (InterPro IPR013187), F-box associated type 1 (InterPro IPR017451)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 17687978 | 17688982 | + | gene-LOC132637219 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 38,273.82 Da | 52.56 | 95.63 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 211 | 321 | 3.2E-5 | IPR013187 |
| Pfam | PF00646 | F-box domain | 4 | 41 | 2.0E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 59 | 6.54E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 40 | 1.8E-6 | - |
| SMART | SM00256 | fbox_2 | 4 | 44 | 9.8E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 104 | 332 | 1.8E-20 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 43 | 10.557245 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47150.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_019224536.1 | PREDICTED: F-box/kelch-repeat protein At3g23880-like [Nicotiana attenuata] | 0 |
| Q9SD58 | Putative F-box protein At3g47150 OS=Arabidopsis thaliana OX=3702 GN=At3g47150 PE=4 SV=2 | 0 | |
| TrEMBL | A0A314KVP0 | F-boxkelch-repeat protein OS=Nicotiana attenuata OX=49451 GN=A4A49_06855 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27685 |
| Solanaceae | Lycium barbarum | 7 | gene-LOC132611547, gene-LOC132611549, gene-LOC132611550 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI002051000, SOLCI002051100, SOLCI002060600 |