Basic Information
Locus ID:
gene-LOC132636931
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 146918847 | 146928742 | - | gene-LOC132636931 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.65 | 44,233.15 Da | 45.94 | 69.29 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 51 | 121 | 2.76385E-36 | - |
| CDD | cd12619 | RRM2_PUB1 | 135 | 209 | 1.36649E-52 | - |
| CDD | cd12354 | RRM3_TIA1_like | 255 | 329 | 6.69818E-35 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 136 | 206 | 2.4E-18 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 51 | 117 | 1.2E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 257 | 322 | 1.6E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 48 | 211 | 1.56E-43 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 246 | 338 | 2.71E-21 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 132 | 212 | 7.0E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 232 | 334 | 2.2E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 131 | 8.2E-23 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 256 | 325 | 1.1E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 50 | 119 | 1.0E-15 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 256 | 325 | 24.0 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 135 | 208 | 0.0045 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 135 | 208 | 7.8E-25 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 255 | 329 | 14.999257 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 134 | 212 | 17.148237 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 49 | 123 | 14.828703 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14100.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_047260356.1 | oligouridylate-binding protein 1 [Capsicum annuum] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U8E1L3 | oligouridylate-binding protein 1 OS=Capsicum annuum OX=4072 GN=LOC107840890 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology