Basic Information
Locus ID:
gene-LOC132636902
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 146539560 | 146543613 | + | gene-LOC132636902 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 26,098.03 Da | 52.87 | 87.64 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 14 | 52 | 8.6E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 6 | 59 | 1.62E-10 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 141 | 199 | 1.7E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 100 | 1.3E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 14 | 52 | 6.6E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 14 | 53 | 11.191014 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 30 | 39 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 113 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G06770.3 | - | 0 |
| RefSeq | XP_016540344.2 | E3 ubiquitin protein ligase DRIP1-like isoform X2 [Capsicum annuum] | 0 |
| Q9M9Y4 | E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana OX=3702 GN=DRIP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1J6IM99 | E3 ubiquitin protein ligase drip2 OS=Nicotiana attenuata OX=49451 GN=DRIP2_4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636902 |
| Solanaceae | Solanum chilense | 1 | SOLCI002153600 |