Basic Information
Locus ID:
gene-LOC132636700
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
WD repeat-containing protein 26-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 141360128 | 141369818 | - | gene-LOC132636700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 64,048.78 Da | 46.62 | 93.55 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 252 | 544 | 6.18903E-52 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 510 | 544 | 3.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 251 | 286 | 1.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 463 | 501 | 0.083 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 336 | 374 | 0.0016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 295 | 332 | 0.042 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 246 | 544 | 1.47E-63 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 246 | 508 | 6.2E-60 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 509 | 572 | 5.3E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 293 | 332 | 2.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 335 | 374 | 4.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 505 | 545 | 1.1E-10 | IPR001680 |
| SMART | SM00668 | ctlh | 91 | 148 | 3.1E-4 | IPR006595 |
| SMART | SM00320 | WD40_4 | 248 | 287 | 2.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 460 | 502 | 0.36 | IPR001680 |
| SMART | SM00320 | WD40_4 | 418 | 456 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 376 | 416 | 3.5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 512 | 554 | 15.454345 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 512 | 550 | 12.051043 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 300 | 337 | 10.811958 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 255 | 289 | 10.442869 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 342 | 375 | 10.374778 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 342 | 375 | 8.729241 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 58 | 90 | 8.491517 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 255 | 289 | 12.546961 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 91 | 148 | 9.646753 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 300 | 341 | 14.485216 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 274 | 288 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 361 | 375 | 8.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 532 | 546 | 8.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 274 | 288 | 8.9E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_009780908.1 | PREDICTED: WD repeat-containing protein 26-like [Nicotiana sylvestris] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U7X208 | WD repeat-containing protein 26-like OS=Nicotiana sylvestris OX=4096 GN=LOC104229882 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology