Basic Information
Locus ID:
gene-LOC132636646
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1 NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 139323437 | 139333594 | + | gene-LOC132636646 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.04 | 59,838.74 Da | 38.34 | 92.61 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01493 | APPBP1_RUB | 7 | 535 | 0.0 | - |
| Pfam | PF00899 | ThiF family | 8 | 516 | 1.3E-25 | IPR000594 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 7 | 533 | 1.18E-136 | IPR035985 |
| Gene3D | G3DSA:3.40.50.720 | - | 361 | 537 | 9.3E-35 | - |
| Gene3D | G3DSA:3.40.50.720 | - | 2 | 306 | 2.2E-67 | - |
| PIRSF | PIRSF039099 | APP-BP1 | 1 | 537 | 1.4E-178 | IPR030667 |
| Coils | Coil | Coil | 534 | 537 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05180.1 | NAD(P)-binding Rossmann-fold superfamily protein. Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes, primarily, but not exclusively, affecting auxin responses. Acts alongside AS1 to exclude BP expression from leaves. | 0 |
| RefSeq | XP_049359055.1 | NEDD8-activating enzyme E1 regulatory subunit AXR1-like isoform X1 [Solanum verrucosum] | 0 |
| P42744 | NEDD8-activating enzyme E1 regulatory subunit AXR1 OS=Arabidopsis thaliana OX=3702 GN=AXR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J6I9Q7 | Nedd8-activating enzyme e1 regulatory subunit axr1 (Fragment) OS=Nicotiana attenuata OX=49451 GN=AXR1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21069 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12381 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015974 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g188530 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25718, Sbi_jg9549 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19087 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022817 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl44510, Sgl49279 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001265, gene:ENSEOMG00000002640 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0009890, CQ.Regalona.r1.6BG0011850 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30015700, pistato.v30018460 |
| Apiaceae | Apium graveolens | 2 | Ag2G00524, Ag8G00874 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G008070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720496 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1196.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G16397 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G05180.1, AT2G32410.1, AT3G25880.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007362m.g.v1.0, Thhalv10016512m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g04030.v2.2, Sp4g14780.v2.2, SpUn0024_0110.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g002160.2N, BniB03g001260.2N, BniB06g021520.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2432 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2513 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g01230 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0161s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g22600 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2066 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00004412, Pov_00036919 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G01581, Lb1G01590, Lb7G32771 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.385, BH01.341, CH01.183 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0210530, gene-QOZ80_3BG0255640 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0498500.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_060636 |
| Poaceae | Oryza coarctata | 2 | Oco05G027360, Oco06G028380 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g60550.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G031500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103595 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G001530, Chr02G025400, Chr04G031490, Chr07G030500 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G507000, Tel5E01G758100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG047130, gene_TRIDC5AG068130 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G318500.3, TraesCS5A02G476800.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb062550_P001, Zm00001eb117630_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-16605 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2481 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2038, evm.TU.LG14.1218 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g03000 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.60412.3, evm.TU.Scaffold_9_RagTag.1587 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-20419, nbisL1-mrna-20480 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8816 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21345 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.840 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009369 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1218 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4720 |
| Salicaceae | Populus euphratica | 3 | populus_peu16403, populus_peu27025, populus_peu27026 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600800, gene-LOC132636646 |
| Solanaceae | Solanum chilense | 2 | SOLCI001485000, SOLCI003397300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003068, gene-LOC107007600 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_939 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1402 |
| Zosteraceae | Zostera marina | 1 | Zosma03g22820.v3.1 |