Basic Information
Locus ID:
gene-LOC132636488
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
FBD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 130937938 | 130945221 | - | gene-LOC132636488 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.76 | 59,035.31 Da | 52.60 | 104.62 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 144 | 174 | 9.1E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 139 | 185 | 1.18E-10 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 284 | 492 | 1.41E-9 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 141 | 185 | 2.5E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 240 | 509 | 9.0E-10 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 139 | 173 | 9.312009 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56420.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_009802492.1 | PREDICTED: putative F-box/LRR-repeat protein At4g15060 [Nicotiana sylvestris] | 0 |
| Q9FM89 | F-box/FBD/LRR-repeat protein At5g56420 OS=Arabidopsis thaliana OX=3702 GN=At5g56420 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1S3ZSX7 | F-box/FBD/LRR-repeat protein At5g56420-like isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107790082 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 7 | Ah023203, Ah023944, Ah028596, Ah028601, Ah028833, Ah035632 ... |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019563 |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000009927, gene:ENSEOMG00000016680 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2AG0017870 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18895 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132613385, gene-LOC132622071, gene-LOC132636488 |