Basic Information
Locus ID:
gene-LOC132636473
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 130315623 | 130326785 | - | gene-LOC132636473 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 95,783.51 Da | 57.74 | 74.95 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 550 | 853 | 5.25629E-39 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 632 | 668 | 4.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 717 | 752 | 0.0014 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 544 | 854 | 9.82E-55 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 66 | 296 | 3.68E-18 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 520 | 857 | 1.2E-122 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 69 | 308 | 6.1E-23 | - |
| SMART | SM00320 | WD40_4 | 586 | 625 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 761 | 800 | 5.7 | IPR001680 |
| SMART | SM00220 | serkin_6 | 3 | 297 | 0.0042 | IPR000719 |
| SMART | SM00320 | WD40_4 | 540 | 575 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 714 | 752 | 3.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 628 | 668 | 4.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 811 | 855 | 370.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 671 | 710 | 0.39 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 721 | 755 | 10.891048 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 635 | 672 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 635 | 677 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 721 | 755 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 297 | 9.078988 | IPR000719 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 655 | 669 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 739 | 753 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 612 | 626 | 1.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 655 | 669 | 1.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 739 | 753 | 1.2E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 381 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 400 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 440 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53090.1 | SPA1-related 4. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. | 0 |
| RefSeq | XP_049403213.1 | protein SPA1-RELATED 4-like isoform X1 [Solanum stenotomum] | 0 |
| Q94BM7 | Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1 | 0 | |
| TrEMBL | M1B8I4 | Ubiquitin ligase protein cop1 OS=Solanum tuberosum OX=4113 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology