Basic Information
Locus ID:
gene-LOC132636432
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 128887091 | 128911499 | + | gene-LOC132636432 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 55,928.83 Da | 43.54 | 89.52 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 118 | 150 | 3.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 157 | 194 | 0.0035 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 101 | 207 | 3.11E-18 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 54 | 220 | 5.1E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 154 | 194 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 111 | 150 | 2.3E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 118 | 150 | 9.672996 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 161 | 198 | 9.361965 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 161 | 203 | 11.544415 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 181 | 195 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_016515806.1 | PREDICTED: transcriptional corepressor LEUNIG_HOMOLOG-like, partial [Nicotiana tabacum] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S4DQU9 | transcriptional corepressor LEUNIG_HOMOLOG-like OS=Nicotiana tabacum OX=4097 GN=LOC107832472 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 4 | gene-LOC132603705, gene-LOC132623247, gene-LOC132623784 ... |