Basic Information
Locus ID:
gene-LOC132636311
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 120830487 | 120840040 | - | gene-LOC132636311 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 70,087.78 Da | 39.93 | 90.74 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 241 | 538 | 4.1208E-160 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 247 | 534 | 4.4E-27 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 3 | 219 | 1.05E-23 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 247 | 539 | 7.33E-38 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 241 | 539 | 1.8E-40 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 1 | 221 | 3.2E-21 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 1 | 224 | 26.225552 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 240 | 539 | 29.765915 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_019260666.1 | PREDICTED: glycerophosphodiester phosphodiesterase GDPDL3-like isoform X1 [Nicotiana attenuata] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A314LD68 | glycerophosphodiester phosphodiesterase OS=Nicotiana attenuata OX=49451 GN=GDPDL3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology