Basic Information
Locus ID:
gene-LOC132636276
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
ARID/BRIGHT DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 118507666 | 118520377 | - | gene-LOC132636276 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.25 | 36,244.22 Da | 45.46 | 66.89 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 244 | 307 | 1.69445E-16 | - |
| CDD | cd16872 | ARID_HMGB9-like | 39 | 124 | 6.04605E-43 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 244 | 311 | 3.6E-11 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 41 | 124 | 5.9E-15 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 231 | 313 | 2.23E-18 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 37 | 135 | 8.37E-27 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 228 | 318 | 1.7E-17 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 28 | 139 | 3.5E-25 | IPR036431 |
| SMART | SM00501 | bright_3 | 38 | 129 | 2.7E-27 | IPR001606 |
| SMART | SM00398 | hmgende2 | 243 | 312 | 3.9E-11 | IPR009071 |
| SMART | SM01014 | ARID_2 | 34 | 124 | 3.5E-24 | - |
| ProSiteProfiles | PS51011 | ARID domain profile. | 37 | 128 | 23.649702 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 244 | 311 | 13.232903 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_019247112.1 | PREDICTED: high mobility group B protein 10 [Nicotiana attenuata] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J6J3J4 | High mobility group b protein 10 OS=Nicotiana attenuata OX=49451 GN=HMGB10 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology