Basic Information
Locus ID:
gene-LOC132636158
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 99216177 | 99225006 | - | gene-LOC132636158 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 117,687.35 Da | 42.34 | 85.28 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17814 | LisH-like dimerisation domain | 4 | 32 | 2.6E-5 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 847 | 880 | 0.04 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 402 | 437 | 0.002 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 303 | 612 | 4.97E-36 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 773 | 1026 | 4.45E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 698 | 1030 | 1.9E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 234 | 457 | 1.4E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 462 | 640 | 4.3E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 798 | 838 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 841 | 880 | 5.4E-4 | IPR001680 |
| SMART | SM00667 | Lish | 3 | 35 | 2.6E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 295 | 334 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 535 | 571 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 485 | 528 | 9.8 | IPR001680 |
| SMART | SM00668 | ctlh | 33 | 91 | 7.8E-9 | IPR006595 |
| SMART | SM00320 | WD40_4 | 349 | 389 | 420.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 396 | 437 | 3.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 440 | 481 | 0.18 | IPR001680 |
| SMART | SM00320 | WD40_4 | 932 | 973 | 220.0 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 3 | 35 | 10.254764 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 848 | 880 | 10.416506 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 91 | 11.491148 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 848 | 889 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 403 | 446 | 10.675542 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1027 | 1047 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_016433807.1 | PREDICTED: protein TPR3-like [Nicotiana tabacum] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A1S3X1L1 | protein TPR3-like OS=Nicotiana tabacum OX=4097 GN=LOC107760294 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology