Basic Information
Locus ID:
gene-LOC132635574
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Autophagy-related protein 18a-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 23642049 | 23647936 | + | gene-LOC132635574 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.17 | 48,030.27 Da | 47.64 | 83.35 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 295 | 319 | 0.0011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 72 | 322 | 8.16E-26 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 122 | 413 | 6.6E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 279 | 320 | 0.0086 | IPR001680 |
| SMART | SM00320 | WD40_4 | 236 | 276 | 1.0 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_006355218.1 | PREDICTED: autophagy-related protein 18a-like [Solanum tuberosum] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | M1CW72 | WD-repeat protein OS=Solanum tuberosum OX=4113 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology