Basic Information
Locus ID:
gene-LOC132635409
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 16805523 | 16807360 | - | gene-LOC132635409 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.06 | 33,168.14 Da | 80.56 | 49.08 | -0.94 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 176 | 218 | 2.3E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 7 | 36 | 2.1E-8 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 156 | 226 | 4.86E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 223 | 1.9E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 177 | 217 | 8.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 177 | 218 | 12.386007 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 294 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_049361867.1 | probable E3 ubiquitin-protein ligase RHC1A [Solanum verrucosum] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0V0HSZ4 | RING-type E3 ubiquitin transferase OS=Solanum chacoense OX=4108 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology