Basic Information
Locus ID:
gene-LOC132635271
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
ABC transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 43748263 | 43758932 | - | gene-LOC132635271 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.29 | 167,107.89 Da | 36.27 | 107.27 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 624 | 824 | 6.67922E-110 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 935 | 1229 | 5.20993E-90 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1252 | 1472 | 1.52704E-115 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 310 | 598 | 1.95636E-99 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 948 | 1181 | 4.2E-33 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 642 | 776 | 5.6E-18 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 310 | 575 | 1.6E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1271 | 1419 | 4.0E-29 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 947 | 1230 | 2.88E-46 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1245 | 1484 | 3.33E-68 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 305 | 609 | 3.4E-35 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 618 | 838 | 8.42E-56 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 902 | 1235 | 8.9E-54 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 601 | 866 | 1.5E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1237 | 1490 | 4.0E-81 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 297 | 600 | 3.7E-46 | IPR036640 |
| SMART | SM00382 | AAA_5 | 651 | 824 | 5.2E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1280 | 1465 | 1.2E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 937 | 1217 | 31.705847 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 309 | 590 | 34.261326 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 624 | 847 | 22.749207 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1254 | 1488 | 17.433773 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 749 | 763 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_009586976.1 | putative ABC transporter C family member 15 [Nicotiana tomentosiformis] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1S4DC94 | ABC-type xenobiotic transporter OS=Nicotiana tabacum OX=4097 GN=LOC107828201 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology