Basic Information
Locus ID:
gene-LOC132635217
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
SHR-binding domain of vacuolar-sorting associated protein 13
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 12005326 | 12071168 | - | gene-LOC132635217 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 482,309.31 Da | 41.95 | 89.33 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 804 | 902 | 9.31171E-4 | - |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 4147 | 4279 | 1.6E-7 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 134 | 375 | 7.4E-68 | IPR031646 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3297 | 3455 | 8.8E-10 | IPR009543 |
| Pfam | PF00169 | PH domain | 803 | 910 | 6.3E-9 | IPR001849 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 3 | 109 | 1.5E-29 | IPR026854 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 562 | 781 | 1.2E-30 | IPR031642 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1984 | 2120 | 4.4E-9 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2204 | 2348 | 1.7E-9 | IPR009291 |
| SUPERFAMILY | SSF50729 | PH domain-like | 791 | 930 | 1.03E-11 | - |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2657 | 2752 | 2.55E-5 | IPR035892 |
| Gene3D | G3DSA:2.30.29.30 | - | 797 | 919 | 1.6E-8 | IPR011993 |
| SMART | SM00233 | PH_update | 801 | 913 | 3.6E-10 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 800 | 911 | 10.5775 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1175 | 1196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2174 | 2196 | - | - |
| Coils | Coil | Coil | 876 | 896 | - | - |
| Coils | Coil | Coil | 442 | 462 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_049376497.1 | uncharacterized protein LOC125841418 [Solanum stenotomum] | 0 |
| Q54LB8 | Intermembrane lipid transfer protein vps13A OS=Dictyostelium discoideum OX=44689 GN=vps13A PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U8GQU2 | uncharacterized protein LOC107869044 isoform X1 OS=Capsicum annuum OX=4072 GN=LOC107869044 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology