Basic Information
Locus ID:
gene-LOC132635094
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
14 kDa proline-rich protein DC2.15-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 8552147 | 8552886 | + | gene-LOC132635094 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 19,208.71 Da | 52.70 | 81.09 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01958 | HPS_like | 98 | 182 | 2.07746E-26 | IPR027923 |
| Pfam | PF14547 | Hydrophobic seed protein | 99 | 183 | 1.1E-24 | IPR027923 |
| SUPERFAMILY | SSF47699 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin | 102 | 183 | 3.89E-24 | IPR036312 |
| Gene3D | G3DSA:1.10.110.10 | - | 99 | 184 | 1.4E-28 | IPR036312 |
| SMART | SM00499 | aai_6 | 100 | 182 | 7.3E-7 | IPR016140 |
| PRINTS | PR01217 | Proline rich extensin signature | 19 | 31 | 1.4E-16 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 70 | 91 | 1.4E-16 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 34 | 50 | 1.4E-16 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 55 | 67 | 1.4E-16 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 98 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12480.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein. a putative lipid transfer protein, vernalization-responsive and cold-induced | 0 |
| RefSeq | XP_016569189.1 | lipid transfer protein EARLI 1 [Capsicum annuum] | 0 |
| Q39176 | Lipid transfer protein EARLI 1 OS=Arabidopsis thaliana OX=3702 GN=EARLI1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G2XKV2 | PEARLI1-like lipid transfer protein 2 OS=Capsicum baccatum OX=33114 GN=CQW23_00478 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 9 | gene-LOC132613391, gene-LOC132614327, gene-LOC132614440 ... |