Basic Information
Locus ID:
gene-LOC132634994
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 6099872 | 6105212 | - | gene-LOC132634994 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.38 | 56,149.47 Da | 53.05 | 76.01 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 359 | 399 | 0.019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 318 | 354 | 1.0E-5 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 228 | 295 | 1.6E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 448 | 484 | 8.2E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 200 | 490 | 4.49E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 180 | 489 | 4.4E-123 | IPR015943 |
| SMART | SM00320 | WD40_4 | 445 | 484 | 1.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 231 | 271 | 0.008 | IPR001680 |
| SMART | SM00320 | WD40_4 | 187 | 228 | 300.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 357 | 399 | 0.0019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 315 | 354 | 5.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 274 | 311 | 0.075 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 239 | 280 | 9.97376 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 452 | 485 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 322 | 354 | 10.917412 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 452 | 485 | 11.919224 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 322 | 363 | 13.449252 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 471 | 485 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 61 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22910.1 | FIZZY-related 2. | 0 |
| RefSeq | XP_006358847.1 | PREDICTED: protein FIZZY-RELATED 2-like [Solanum tuberosum] | 0 |
| Q9M7I2 | B-type cell cycle switch protein ccs52A OS=Medicago truncatula OX=3880 GN=CCS52A PE=1 SV=1 | 0 | |
| TrEMBL | M1C2T4 | Cell cycle switch 52A OS=Solanum tuberosum OX=4113 GN=102598991 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology