Basic Information
Locus ID:
gene-LOC132634874
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Short Name:
BRH1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 3589200 | 3590057 | + | gene-LOC132634874 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 18,933.63 Da | 53.95 | 91.52 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 86 | 129 | 2.22998E-15 | - |
| Pfam | PF13639 | Ring finger domain | 85 | 129 | 3.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 66 | 137 | 8.94E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 136 | 5.0E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 85 | 129 | 0.0086 | IPR011016 |
| SMART | SM00184 | ring_2 | 86 | 128 | 1.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 86 | 129 | 12.799091 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61460.1 | brassinosteroid-responsive RING-H2. Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide. | 0 |
| RefSeq | XP_016436919.1 | PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Nicotiana tabacum] | 0 |
| Q9XF92 | Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1S3XAS3 | E3 ubiquitin-protein ligase RHA1B-like OS=Nicotiana tabacum OX=4097 GN=LOC107763026 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology