Basic Information
Locus ID:
gene-LOC132634837
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 2769173 | 2777509 | + | gene-LOC132634837 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 92,117.51 Da | 41.98 | 86.41 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 554 | 687 | 1.76582E-24 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 556 | 686 | 4.0E-38 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 710 | 752 | 2.6E-12 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 96 | 343 | 1.7E-5 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 516 | 757 | 6.23E-61 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 688 | 793 | 2.8E-96 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 515 | 797 | 2.8E-96 | IPR027417 |
| SMART | SM00382 | AAA_5 | 552 | 689 | 6.8E-21 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 659 | 678 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 755 | 776 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_019236132.1 | PREDICTED: transitional endoplasmic reticulum ATPase homolog 2 [Nicotiana attenuata] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A1J6KQQ4 | Katanin p60 atpase-containing subunit a1 OS=Nicotiana attenuata OX=49451 GN=AAA1_0 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology