Basic Information
Locus ID:
gene-LOC132634818
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 2329585 | 2341518 | + | gene-LOC132634818 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 118,004.06 Da | 41.91 | 76.50 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 829 | 867 | 0.03 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 741 | 1056 | 3.66E-48 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 283 | 557 | 2.24E-16 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 718 | 1059 | 8.0E-124 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 292 | 559 | 1.7E-21 | - |
| SMART | SM00320 | WD40_4 | 827 | 867 | 3.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 785 | 824 | 0.66 | IPR001680 |
| SMART | SM00320 | WD40_4 | 735 | 774 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 962 | 1001 | 66.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 870 | 909 | 0.014 | IPR001680 |
| SMART | SM00220 | serkin_6 | 204 | 553 | 0.0021 | IPR000719 |
| SMART | SM00320 | WD40_4 | 1009 | 1057 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 913 | 951 | 1.4E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 809 | 833 | 8.870959 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 157 | 553 | 8.6267 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 920 | 953 | 9.704691 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 920 | 960 | 11.744925 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 834 | 876 | 10.809215 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 938 | 952 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 811 | 825 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 811 | 825 | 6.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 938 | 952 | 6.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 854 | 868 | 6.1E-6 | IPR020472 |
| Coils | Coil | Coil | 586 | 613 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_006343887.1 | PREDICTED: protein SPA1-RELATED 2 isoform X1 [Solanum tuberosum] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1U8F8Y0 | protein SPA1-RELATED 2 OS=Capsicum annuum OX=4072 GN=LOC107855298 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology