Basic Information
Locus ID:
gene-LOC132634259
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 136445738 | 136446936 | - | gene-LOC132634259 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.38 | 18,704.18 Da | 26.64 | 97.00 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 96 | 158 | 7.14512E-17 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 96 | 157 | 4.3E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 19 | 81 | 2.1E-10 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 9 | 159 | 3.32E-39 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 92 | 165 | 3.1E-22 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 2 | 91 | 4.5E-18 | - |
| SMART | SM00054 | efh_1 | 56 | 84 | 1.4 | IPR002048 |
| SMART | SM00054 | efh_1 | 20 | 48 | 0.081 | IPR002048 |
| SMART | SM00054 | efh_1 | 132 | 160 | 4.0E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 96 | 124 | 4.2E-4 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 52 | 87 | 9.26907 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 92 | 127 | 13.788124 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 16 | 51 | 13.425486 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 128 | 163 | 13.397589 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 65 | 77 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 29 | 41 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 105 | 117 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 141 | 153 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_016567607.1 | probable calcium-binding protein CML15 [Capsicum annuum] | 0 |
| Q6L5F4 | Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica OX=39947 GN=CML14 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G3A1W1 | probable calcium-binding protein CML15 OS=Capsicum annuum OX=4072 GN=LOC107865937 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology