Basic Information
Locus ID:
gene-LOC132633595
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 148898562 | 148906987 | - | gene-LOC132633595 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 29,629.83 Da | 52.65 | 103.49 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 70 | 118 | 2.5264E-19 | - |
| Pfam | PF12906 | RING-variant domain | 70 | 117 | 6.5E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 65 | 121 | 7.57E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 129 | 9.5E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 69 | 118 | 2.3E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 62 | 124 | 20.21932 | IPR011016 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_016562352.2 | E3 ubiquitin-protein ligase MARCHF1 [Capsicum annuum] | 0 |
| TrEMBL | A0A1U8FT65 | E3 ubiquitin-protein ligase MARCH1 OS=Capsicum annuum OX=4072 GN=LOC107861589 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology