Basic Information
Locus ID:
gene-LOC132633566
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 148565467 | 148572256 | - | gene-LOC132633566 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 75,382.04 Da | 42.71 | 86.81 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 409 | 676 | 2.49672E-89 | - |
| Pfam | PF13516 | Leucine Rich repeat | 133 | 148 | 0.075 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 405 | 673 | 3.7E-43 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 22 | 62 | 1.5E-9 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 20 | 225 | 5.05E-36 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 381 | 673 | 3.01E-72 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 21 | 237 | 4.1E-46 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 372 | 478 | 1.7E-29 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 480 | 695 | 2.7E-55 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 403 | 676 | 35.97599 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 409 | 432 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 271 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_019244026.1 | PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6 [Nicotiana attenuata] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J6IK23 | Protein strubbelig-receptor family 6 OS=Nicotiana attenuata OX=49451 GN=SRF6_0 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology