Basic Information
Locus ID:
gene-LOC132633550
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Protein present in Fab1, YOTB, Vac1, and EEA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 148381591 | 148392690 | + | gene-LOC132633550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 199,806.09 Da | 46.04 | 78.51 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03334 | Fab1_TCP | 372 | 644 | 2.63684E-134 | - |
| CDD | cd17300 | PIPKc_PIKfyve | 1503 | 1766 | 6.77373E-150 | IPR044769 |
| Pfam | PF01363 | FYVE zinc finger | 32 | 101 | 1.2E-16 | IPR000306 |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1542 | 1709 | 8.7E-33 | IPR002498 |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1710 | 1764 | 1.0E-6 | IPR002498 |
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 393 | 635 | 5.6E-36 | IPR002423 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 30 | 108 | 2.3E-19 | IPR011011 |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 438 | 610 | 7.53E-44 | IPR027409 |
| SUPERFAMILY | SSF56104 | SAICAR synthase-like | 1502 | 1766 | 1.7E-78 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 113 | 6.7E-21 | IPR013083 |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 437 | 610 | 2.5E-55 | IPR027409 |
| Gene3D | G3DSA:3.30.810.10 | - | 1627 | 1767 | 6.6E-41 | - |
| Gene3D | G3DSA:3.30.800.10 | Phosphatidylinositol Phosphate Kinase II Beta | 1462 | 1623 | 9.5E-38 | IPR027484 |
| SMART | SM00330 | PIPK_2 | 1476 | 1767 | 5.0E-129 | IPR002498 |
| SMART | SM00064 | fyve_4 | 27 | 102 | 5.1E-20 | IPR000306 |
| ProSiteProfiles | PS50178 | Zinc finger FYVE/FYVE-related type profile. | 35 | 101 | 12.701917 | IPR017455 |
| ProSiteProfiles | PS51455 | Phosphatidylinositol phosphate kinase (PIPK) domain profile. | 1431 | 1766 | 58.378269 | IPR002498 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1303 | 1325 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1775 | 1795 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1309 | 1325 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1153 | 1174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1776 | 1795 | - | - |
| Coils | Coil | Coil | 1063 | 1090 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14270.1 | phosphatidylinositol-4-phosphate 5-kinase family protein. Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. | 0 |
| RefSeq | XP_016562431.2 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B isoform X2 [Capsicum annuum] | 0 |
| Q9LUM0 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B OS=Arabidopsis thaliana OX=3702 GN=FAB1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G2WPE3 | 1-phosphatidylinositol-3-phosphate 5-kinase OS=Capsicum baccatum OX=33114 GN=CQW23_11300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology