Basic Information
Locus ID:
gene-LOC132633514
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 147814505 | 147821211 | - | gene-LOC132633514 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 45,595.56 Da | 52.99 | 68.63 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 137 | 211 | 5.48984E-51 | - |
| CDD | cd12352 | RRM1_TIA1_like | 53 | 123 | 1.39392E-33 | - |
| CDD | cd12354 | RRM3_TIA1_like | 256 | 331 | 8.90876E-32 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 138 | 208 | 7.5E-18 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 258 | 324 | 7.2E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 53 | 119 | 6.7E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 130 | 221 | 3.9E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 246 | 340 | 3.8E-20 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 35 | 129 | 1.61E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 235 | 335 | 9.1E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 130 | 1.3E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 131 | 229 | 7.8E-27 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 137 | 210 | 6.7E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 52 | 121 | 8.1E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 257 | 327 | 9.2E-15 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 256 | 331 | 14.965146 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 136 | 214 | 16.960629 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 51 | 125 | 14.538761 | IPR000504 |
| Coils | Coil | Coil | 3 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_016562474.1 | oligouridylate-binding protein 1B isoform X1 [Capsicum annuum] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G3D0E7 | Oligouridylate-binding protein 1A OS=Capsicum chinense OX=80379 GN=BC332_09565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology