Basic Information
Locus ID:
gene-LOC132633450
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
phosphatase 2A 55 kDa regulatory subunit B
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 146778027 | 146786416 | - | gene-LOC132633450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 57,513.64 Da | 53.54 | 74.43 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 345 | 370 | 0.19 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 226 | 262 | 0.14 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 38 | 507 | 2.14E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 323 | 512 | 5.3E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 74 | 322 | 5.1E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 223 | 262 | 0.94 | IPR001680 |
| SMART | SM00320 | WD40_4 | 30 | 65 | 4.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 273 | 313 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 332 | 370 | 92.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 104 | 144 | 5.1 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 8 | 515 | 4.4E-199 | IPR000009 |
| ProSitePatterns | PS01024 | Protein phosphatase 2A regulatory subunit PR55 signature 1. | 104 | 118 | - | IPR018067 |
| ProSitePatterns | PS01025 | Protein phosphatase 2A regulatory subunit PR55 signature 2. | 232 | 246 | - | IPR018067 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 375 | 400 | 1.2E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 484 | 513 | 1.2E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 319 | 346 | 1.2E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 347 | 374 | 1.2E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 401 | 427 | 1.2E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 120 | 148 | 1.2E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 44 | 64 | 1.2E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 290 | 318 | 1.2E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 262 | 289 | 1.2E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 91 | 119 | 1.2E-160 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 234 | 261 | 1.2E-160 | IPR000009 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 465 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17720.1 | Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B | 0 |
| RefSeq | XP_049355965.1 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1 [Solanum verrucosum] | 0 |
| Q39247 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana OX=3702 GN=PP2AB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8FTU5 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Capsicum annuum OX=4072 GN=LOC107861751 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology