Basic Information
Locus ID:
gene-LOC132633328
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 144984052 | 144989401 | - | gene-LOC132633328 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 65,488.20 Da | 47.90 | 95.15 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 30 | 62 | 2.5E-9 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 160 | 339 | 1.14E-18 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 23 | 61 | 9.68E-10 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 82 | 369 | 3.1E-16 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 30 | 75 | 1.0E-8 | - |
| SMART | SM00256 | fbox_2 | 32 | 71 | 0.0076 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 26 | 60 | 10.371784 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_049395393.1 | uncharacterized protein LOC125859647 [Solanum stenotomum] | 0 |
| TrEMBL | A0A3Q7FTA6 | F-box domain-containing protein OS=Solanum lycopersicum OX=4081 GN=101256367 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah003914 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633328 |
| Solanaceae | Solanum chilense | 2 | SOLCI004334800, SOLCI006256100 |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107012592, gene-LOC107013651, gene-LOC107013656 ... |