Basic Information
Locus ID:
gene-LOC132633263
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Hemerythrin HHE cation binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 143868475 | 143879436 | + | gene-LOC132633263 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 139,558.39 Da | 57.36 | 77.11 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 309 | 438 | 1.17564E-16 | - |
| CDD | cd12108 | Hr-like | 648 | 807 | 5.94753E-29 | - |
| CDD | cd12108 | Hr-like | 50 | 175 | 9.09747E-33 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1119 | 1162 | 1.01877E-15 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 307 | 440 | 1.1E-7 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 53 | 177 | 5.6E-12 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 991 | 1066 | 1.2E-18 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 1167 | 1224 | 2.9E-23 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 1119 | 1161 | 1.4E-7 | IPR001841 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 646 | 808 | 5.7E-8 | IPR012312 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 984 | 1047 | 1.22E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1119 | 1166 | 4.82E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1057 | 1113 | 3.14E-15 | IPR037275 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 639 | 872 | 2.0E-25 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1190 | 1231 | 1.3E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1113 | 1164 | 2.5E-10 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 309 | 456 | 2.7E-19 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 45 | 195 | 1.2E-33 | - |
| SMART | SM00184 | ring_2 | 1120 | 1161 | 1.1E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1056 | 1119 | 29.417805 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1120 | 1162 | 11.397556 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 984 | 1053 | 25.745834 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 880 | 898 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 880 | 901 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_049367300.1 | zinc finger protein BRUTUS-like [Solanum verrucosum] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8FWE1 | Zinc finger protein BRUTUS OS=Capsicum annuum OX=4072 GN=T459_10783 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology